STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_01395RpiR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)    
Predicted Functional Partners:
ddpA
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.807
ddpX
D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
 
     0.790
ddpB
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.691
DSJ_10205
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.689
DSJ_10200
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.649
DSJ_17800
TerL protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.647
DSJ_00825
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.608
ddpF
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
  
    0.593
DSJ_17715
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.581
ddpC
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.563
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.