Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DSJ_02115SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (712 aa)    
Predicted Functional Partners:
DSJ_08435
Cation transporter; Involved in zinc efflux across the cytoplasmic membrane; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.691
ravA
ATPase RavA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.665
viaA
Hypothetical protein; Contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.654
arcB
Aerobic respiration two-component sensor histidine kinase ArcB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.582
asnC
Transcriptional regulator AsnC; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.579
DSJ_03880
Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.554
DSJ_12635
Type VI secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.485
DSJ_12645
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.440
DSJ_15350
Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.436
yafJ
Class II glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.431
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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