Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cpxATwo-component system sensor histidine kinase CpxA; Derived by automated computational analysis using gene prediction method: Protein Homology. (459 aa)    
Predicted Functional Partners:
cpxR
Response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
DSJ_18360
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.897
arcB
Aerobic respiration two-component sensor histidine kinase ArcB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.868
phoP
Two-component system response regulator PhoP; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.846
baeR
Two-component system response regulator BaeR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.829
ompR
Two-component system response regulator OmpR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.826
rstA
Two-component system response regulator RstA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.800
qseB
Response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.762
arcA
Two-component system response regulator ArcA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.760
basR
Two-component system response regulator BasR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.755
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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