Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DSJ_03455Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (731 aa)    
Predicted Functional Partners:
DSJ_03475
Aerobactin synthase IucA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.908
DSJ_03470
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.892
DSJ_14625
TonB system transport protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.859
DSJ_03465
Aerobactin synthase IucC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.817
DSJ_03460
Lysine 6-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.783
DSJ_03480
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.702
DSJ_10200
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.644
DSJ_17800
TerL protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.644
DSJ_13570
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.574
DSJ_17715
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.567
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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