STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_04285Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)    
Predicted Functional Partners:
DSJ_04290
Phosphotriesterase-related protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.951
DSJ_04280
Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.910
DSJ_04295
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
 
     0.846
DSJ_04320
BtpA family membrane complex biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.784
DSJ_04310
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.719
DSJ_03140
Polysaccharide biosynthesis protein; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.519
DSJ_07905
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.503
DSJ_07880
Ribokinase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.459
DSJ_04275
Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.448
DSJ_04315
Ribokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.404
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.