Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
melRTranscriptional regulator MelR; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)    
Predicted Functional Partners:
melA
Alpha-glucosidase/alpha-galactosidase; Catalyses the hydrolysis of terminal non-reducing alpha-D-galactose residues in alpha-D-galactosides; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.755
DSJ_13610
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.669
DSJ_03650
DNA-binding transcriptional regulator RamA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.661
melB
Melibiose:sodium transporter MelB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.661
DSJ_03150
AraC family transcriptional regulator; Regulates genes involved in response to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.658
araC
DNA-binding transcriptional regulator AraC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.612
DSJ_13445
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.598
DSJ_08725
Baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.586
rob
MDR efflux pump AcrAB transcriptional activator RobA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.556
DSJ_08745
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.555
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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