Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
recTRecombinase RecT; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)    
Predicted Functional Partners:
DSJ_05555
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.926
DSJ_05565
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
DSJ_05550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.757
DSJ_05580
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.746
DSJ_05570
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.737
DSJ_05575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.737
DSJ_18795
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.572
DSJ_05545
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.536
DSJ_05585
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.449
queC
7-cyano-7-deazaguanine synthase QueC; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
      
 0.414
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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