Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DSJ_05740Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (510 aa)    
Predicted Functional Partners:
DSJ_06740
Cytochrome C554; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.856
DSJ_15180
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.681
DSJ_11445
Formate dehydrogenase subunit alpha; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.591
DSJ_15590
Metal chaperone, involved in Zn homeostasis, GTPase of family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.540
DSJ_05745
Phosphate starvation-inducible protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.485
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
   
   0.466
hflB
ATP-dependent metalloprotease; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
    
   0.462
DSJ_11245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.461
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
   
   0.429
ccmG
Thiol:disulfide interchange protein; Cytochrome c-type biogenesis thioredoxin; involved in the reduction of disulfide bonds to allow heme bonding; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.412
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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