STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
osmYMolecular chaperone OsmY; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)    
Predicted Functional Partners:
yjbJ
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.
 
  
 0.888
ytjA
DUF1328 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.887
ybaY
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.736
DSJ_21195
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.574
osmC
OsmC family peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.519
ygdI
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.498
wrbA
NAD(P)H:quinone oxidoreductase, type IV; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.483
DSJ_11215
CsbD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.463
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
       0.451
DSJ_06920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.427
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.