STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytjADUF1328 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (53 aa)    
Predicted Functional Partners:
osmY
Molecular chaperone OsmY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.887
yjbJ
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.
 
  
 0.884
DSJ_11215
CsbD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.767
ygdR
DUF903 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.754
DSJ_14595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.699
ygdI
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.672
yraP
Osmotically-inducible protein OsmY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.538
wecH
Acetyltransferase; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
   
    0.452
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.