Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
robMDR efflux pump AcrAB transcriptional activator RobA; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)    
Predicted Functional Partners:
DSJ_13445
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.583
melR
Transcriptional regulator MelR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.556
DSJ_07725
MFS transporter; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.546
araC
DNA-binding transcriptional regulator AraC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.511
DSJ_05930
IS66 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.452
DSJ_03350
Alpha/beta hydrolase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.427
DSJ_05935
Transposase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.427
DSJ_05940
Transposase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.427
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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