Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DSJ_06975Magnesium-translocating P-type ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (900 aa)    
Predicted Functional Partners:
DSJ_13830
CbbBc protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.769
DSJ_14270
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.586
DSJ_00820
TriB protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.504
DSJ_17645
DUF2778 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.481
DSJ_19800
IS630 family transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.468
kefB
Glutathione-regulated potassium-efflux system protein KefB; Pore-forming subunit of a potassium efflux system that confers protection against electrophiles. Catalyzes K(+)/H(+) antiport.
  
 
 0.464
adhE
Bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
   
 0.462
chaA
Sodium-potassium/proton antiporter ChaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.458
rpsH
30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
    
   0.456
rpsM
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
   
   0.449
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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