Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DSJ_07460Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)    
Predicted Functional Partners:
DSJ_07465
Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NiCoT transporter (TC 2.A.52) family.
 
   
 0.957
DSJ_00375
Alternative ribosome-rescue factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.676
DSJ_07455
Stationary phase inducible protein CsiE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.611
DSJ_16335
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.541
DSJ_15175
Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.535
yhhN
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.525
DSJ_03095
Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.487
DSJ_07470
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.449
DSJ_16545
Phage minor tail protein L; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.437
DSJ_16540
Peptidase P60; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.430
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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