Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DSJ_07470Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)    
Predicted Functional Partners:
wzx1
Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.751
DSJ_19695
Chromophore lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S24 family.
  
     0.678
DSJ_11245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.674
DSJ_21450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.661
DSJ_11825
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.631
DSJ_12145
Holliday junction resolvase; Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC; Belongs to the rusA family.
  
     0.614
DSJ_01720
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.609
arcB
Aerobic respiration two-component sensor histidine kinase ArcB; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.562
DSJ_06940
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.548
DSJ_20290
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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