Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_07650Aminoglycoside/multidrug transporter subunit AcrD; Derived by automated computational analysis using gene prediction method: Protein Homology. (1038 aa)    
Predicted Functional Partners:
acrA
Efflux transporter periplasmic adaptor subunit; With AcrD and TolC forms a transport system involved in resistance to a number of compounds including lipophilic antibiotics; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.926
DSJ_13605
Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.900
mdtA
Molecular chaperone; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.888
DSJ_10415
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.855
DSJ_09200
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.785
DSJ_07645
IS66 family transposase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
DSJ_07635
Transposase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.714
DSJ_07640
Transposase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.714
DSJ_13120
Fusaric acid resistance protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.618
DSJ_09190
Multidrug export protein EmrA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.535
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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