Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_08445Homeobox protein YbgS; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)    
Predicted Functional Partners:
DSJ_08440
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.692
galM
Galactose-1-epimerase; Converts alpha-aldose to the beta-anomer.
 
      0.677
osmY
Molecular chaperone OsmY; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.528
DSJ_08435
Cation transporter; Involved in zinc efflux across the cytoplasmic membrane; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.526
DSJ_08450
IS66 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.512
yhbO
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.500
DSJ_08455
Transposase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.482
DSJ_08460
Transposase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.482
osmC
OsmC family peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.426
ybaY
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.406
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.