Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_08995Mechanosensitive ion channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (817 aa)    
Predicted Functional Partners:
DSJ_03365
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.641
DSJ_11245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.639
DSJ_07765
Sulfur reduction protein DsrE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.636
pbpG
D-alanyl-D-alanine endopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S11 family.
 
     0.585
DSJ_16110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.559
DSJ_11825
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.553
thiK
Thiamine kinase; Catalyzes the phosphorylation of thiamine to thiamine phosphate.
  
     0.527
DSJ_00975
Pilus assembly protein HofM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.525
trkA
Trk system potassium transport protein TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.502
DSJ_18130
Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.499
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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