Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
DSJ_09095Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)    
Predicted Functional Partners:
DSJ_19940
Sulfate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.732
DSJ_09050
Sulfate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.728
DSJ_08835
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.652
DSJ_08840
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.652
DSJ_15610
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.635
DSJ_20050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.630
DSJ_20075
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.625
DSJ_20090
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.582
DSJ_08820
Phage head morphogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.574
DSJ_20055
Phage head morphogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.568
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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