ssuB protein (Pantoea stewartii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ssuB

Aliphatic sulfonates ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system. (262 aa)

Predicted Functional Partners:

ssuA

0.990

ssuC

0.983

ssuD

0.979

ssuE

0.972

tauC

0.889

DSJ_12665

0.823

DSJ_12660

0.788

tauA

0.754

DSJ_05895

0.533

DSJ_15510

0.494

Your Current Organism:

Pantoea stewartii

NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DSJ_05895	DSJ_12660	DSJ_05895	DSJ_12660	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate/bicarbonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
DSJ_05895	ssuA	DSJ_05895	DSJ_09670	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
DSJ_05895	ssuB	DSJ_05895	DSJ_09655	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonates ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.	0.533
DSJ_12660	DSJ_05895	DSJ_12660	DSJ_05895	Nitrate/bicarbonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
DSJ_12660	DSJ_12665	DSJ_12660	DSJ_12665	Nitrate/bicarbonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter, permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
DSJ_12660	ssuB	DSJ_12660	DSJ_09655	Nitrate/bicarbonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonates ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.	0.788
DSJ_12660	ssuE	DSJ_12660	DSJ_09675	Nitrate/bicarbonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD(P)H-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
DSJ_12660	tauC	DSJ_12660	DSJ_00620	Nitrate/bicarbonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
DSJ_12665	DSJ_12660	DSJ_12665	DSJ_12660	Nitrate ABC transporter, permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate/bicarbonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
DSJ_12665	ssuA	DSJ_12665	DSJ_09670	Nitrate ABC transporter, permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
DSJ_12665	ssuB	DSJ_12665	DSJ_09655	Nitrate ABC transporter, permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonates ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.	0.823
DSJ_12665	tauA	DSJ_12665	DSJ_00630	Nitrate ABC transporter, permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
DSJ_15510	ssuA	DSJ_15510	DSJ_09670	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
DSJ_15510	ssuB	DSJ_15510	DSJ_09655	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonates ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.	0.494
DSJ_15510	ssuC	DSJ_15510	DSJ_09665	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkanesulfonate transporter permease subunit; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.	0.744
DSJ_15510	ssuD	DSJ_15510	DSJ_15490	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkanesulfonate monooxygenase, FMNH(2)-dependent; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.	0.827
ssuA	DSJ_05895	DSJ_09670	DSJ_05895	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
ssuA	DSJ_12665	DSJ_09670	DSJ_12665	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter, permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
ssuA	DSJ_15510	DSJ_09670	DSJ_15510	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
ssuA	ssuB	DSJ_09670	DSJ_09655	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonates ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.	0.990

page 1 of 4

Server load: medium (44%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About