STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ymbAHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)    
Predicted Functional Partners:
pqiA
Paraquat-inducible protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.952
pqiB
Paraquat-inducible protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.952
rlmL
23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
       0.775
uup
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.743
DSJ_14055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.588
yebS
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.575
yhhL
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.554
ycbX
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.529
yqjE
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.506
yceB
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.478
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.