Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DSJ_09855TetR family transcriptional regulator; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (430 aa)    
Predicted Functional Partners:
DSJ_19695
Chromophore lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S24 family.
   
    0.946
DSJ_09860
Excisionase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.714
DSJ_09965
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.642
DSJ_09875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.612
DSJ_09900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.612
DSJ_09885
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.609
DSJ_09865
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.605
DSJ_09870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.605
DSJ_09880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.605
DSJ_09890
Sodium:solute symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.605
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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