STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_09990Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)    
Predicted Functional Partners:
DSJ_09985
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
DSJ_10025
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.523
DSJ_10020
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.504
DSJ_17785
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.503
DSJ_00045
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.498
DSJ_16395
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.485
DSJ_12145
Holliday junction resolvase; Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC; Belongs to the rusA family.
  
     0.478
dsbA
Protein disulfide oxidoreductase DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.476
yddW
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.467
DSJ_17795
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.460
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.