STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_10020Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)    
Predicted Functional Partners:
DSJ_10025
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.763
DSJ_17800
TerL protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.685
DSJ_10015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.665
DSJ_10140
IS66 family transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.631
DSJ_17785
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.607
DSJ_17795
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.598
DSJ_10010
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.543
DSJ_09990
Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.504
DSJ_07280
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.481
DSJ_12145
Holliday junction resolvase; Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC; Belongs to the rusA family.
 
     0.425
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.