Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
msyBsecY/secA suppressor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)    
Predicted Functional Partners:
DSJ_12840
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.689
yeaG
PrkA family serine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.687
DSJ_22375
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.665
wrbA
NAD(P)H:quinone oxidoreductase, type IV; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.662
osmC
OsmC family peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.635
dkgA
AraC family transcriptional regulator; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.625
DSJ_11495
Trehalose-6-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.514
otsA
Alpha,alpha-trehalose-phosphate synthase; Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-alpha-D- glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose- 6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor; Belongs to the glycosyltransferase 20 family.
   
    0.514
DSJ_15450
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.480
DSJ_10455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.465
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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