Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DSJ_10935DNA replication protein DnaC; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)    
Predicted Functional Partners:
DSJ_10930
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.795
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.728
DSJ_12090
DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.728
DSJ_17895
Helicase DnaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.728
DSJ_10940
Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.720
DSJ_10920
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.636
DSJ_10925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.636
DSJ_10915
The transcriptional repressor of DicA (divison cell) has a hypothetical DNA binding domain. It represses the transcription of dicB and dicC, but its specific role in cellular replication and mode of action are still unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.600
DSJ_18395
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.519
DSJ_04355
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.464
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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