Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
DSJ_11245Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)    
Predicted Functional Partners:
ldcA
Muramoyltetrapeptide carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.775
DSJ_11825
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.766
DSJ_06940
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.765
DSJ_07765
Sulfur reduction protein DsrE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.765
DSJ_08980
Suppressor of fused protein (SUFU); Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.763
DSJ_14005
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.750
DSJ_12525
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.748
DSJ_10310
Transcriptional regulator SdiA; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
DSJ_16110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.742
DSJ_09780
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0319 family.
  
     0.734
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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