Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DSJ_12005Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)    
Predicted Functional Partners:
DSJ_12010
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
DSJ_12015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
DSJ_12020
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.746
DSJ_12025
ssDNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
       0.691
DSJ_12030
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.689
DSJ_16635
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.540
DSJ_18495
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.540
DSJ_10960
Phage N-6-adenine-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.510
DSJ_11990
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.470
DSJ_11995
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.470
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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