STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_12290Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)    
Predicted Functional Partners:
DSJ_12305
Baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.958
DSJ_12315
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.907
DSJ_12285
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.846
DSJ_12235
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.816
DSJ_12295
Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.789
DSJ_12300
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.779
DSJ_12310
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.768
DSJ_12280
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.756
DSJ_15610
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.682
DSJ_20090
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.664
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.