Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DSJ_12340DNA polymerase V; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)    
Predicted Functional Partners:
DSJ_12345
Phage repressor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.675
recA
Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.633
DSJ_12335
Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.518
DSJ_12330
ISL3 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.512
DSJ_12030
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.507
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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