Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (496 aa)    
Predicted Functional Partners:
araB
Ribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
DSJ_16845
alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.950
DSJ_21380
Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.920
lacZ
beta-D-galactosidase; Forms a homotetramer; hydrolyzes lactose disaccharide to galactose and glucose; converts lactose to allolactose which is the natural inducer of the lac operon; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.
  
  
 0.919
galM
Galactose-1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.909
melA
Alpha-glucosidase/alpha-galactosidase; Catalyses the hydrolysis of terminal non-reducing alpha-D-galactose residues in alpha-D-galactosides; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.903
araD
L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.856
yiaS
L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.854
DSJ_03405
Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.800
DSJ_14720
UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.800
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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