STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_13625SrfC; Derived by automated computational analysis using gene prediction method: Protein Homology. (791 aa)    
Predicted Functional Partners:
DSJ_08980
Suppressor of fused protein (SUFU); Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.751
DSJ_10535
Flagellar biosynthesis protein FlgN; Export chaperone for FlgK and FlgL; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.732
DSJ_11245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.729
DSJ_19695
Chromophore lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S24 family.
  
     0.727
DSJ_14005
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.724
DSJ_09780
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0319 family.
  
     0.676
DSJ_12630
Type VI secretion system, core protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.660
DSJ_19835
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.653
DSJ_10310
Transcriptional regulator SdiA; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.645
DSJ_11825
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.630
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.