STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycjXHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)    
Predicted Functional Partners:
ycjF
TIGR01620 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.989
DSJ_14340
Phage shock protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.839
DSJ_14350
Phage shock protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.717
DSJ_14345
DNA-binding transcriptional activator PspC; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.662
mepA
Penicillin-insensitive murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus.
  
     0.612
tyrR
DNA-binding transcriptional regulator TyrR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.584
DSJ_14355
Phage shock protein PspA; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.576
yjaG
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.439
DSJ_07465
Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.404
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.