STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rssBTwo-component system response regulator RssB; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. (338 aa)    
Predicted Functional Partners:
arcB
Aerobic respiration two-component sensor histidine kinase ArcB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.975
DSJ_08435
Cation transporter; Involved in zinc efflux across the cytoplasmic membrane; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.930
rssA
Patatin family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.813
DSJ_21735
TIGR02099 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
DSJ_05750
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.766
cpxA
Two-component system sensor histidine kinase CpxA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.761
yrfF
Intracellular growth attenuator protein igaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.749
yacC
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.738
DSJ_16115
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.737
baeS
Two-component system sensor histidine kinase BaeA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.736
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.