Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yeaGPrkA family serine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (644 aa)    
Predicted Functional Partners:
yeaH
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0229 family.
 
  
 0.997
ycgB
SpoVR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.990
dkgA
AraC family transcriptional regulator; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.759
DSJ_12840
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.689
msyB
secY/secA suppressor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.687
DSJ_09160
DNA starvation/stationary phase protection protein Dps; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.683
DSJ_06920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.678
DSJ_21195
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.671
wrbA
NAD(P)H:quinone oxidoreductase, type IV; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.640
yniA
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the fructosamine kinase family.
   
    0.629
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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