Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ycgBSpoVR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa)    
Predicted Functional Partners:
yeaG
PrkA family serine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.990
yeaH
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0229 family.
 
  
 0.989
yccJ
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.616
yohC
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.594
blc
Hypothetical protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
   
    0.505
uspB
ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.502
DSJ_15515
Phosphate starvation protein PhoH; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.429
DSJ_13620
Barstar, RNAse (barnase) inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.424
DSJ_05145
Endonuclease/exonuclease/phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.414
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate.
      
 0.411
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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