Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
wceMHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)    
Predicted Functional Partners:
wceN
Amylovoran biosynthesis protein AmsD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.933
wzx1
Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.771
wceB
Amylovoran biosynthesis protein AmsB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.676
DSJ_15960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.653
wceK
Colanic acid biosynthesis glycosyltransferase WcaL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.644
wceG1
UDP-phosphate galactose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.636
wceG2
UDP-phosphate galactose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.624
wceJ
Colanic acid biosynthesis pyruvyl transferase WcaK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.596
wceL
Amylovoran biosynthesis protein AmsC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.590
wceF
Amylovoran biosynthesis protein AmsF; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.536
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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