Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_16535Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)    
Predicted Functional Partners:
DSJ_16530
Host specificity protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.990
DSJ_16545
Phage minor tail protein L; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.977
DSJ_16550
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.977
DSJ_16540
Peptidase P60; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.875
DSJ_16555
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.856
DSJ_14535
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   0.659
DSJ_14540
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   0.659
DSJ_17500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.601
DSJ_10960
Phage N-6-adenine-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.594
DSJ_17705
Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.579
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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