Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DSJ_16545Phage minor tail protein L; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)    
Predicted Functional Partners:
DSJ_16550
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.994
DSJ_16530
Host specificity protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.978
DSJ_16535
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.977
DSJ_16540
Peptidase P60; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.969
DSJ_16555
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.964
DSJ_14535
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.746
DSJ_14540
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.746
DSJ_16560
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.724
DSJ_16580
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.680
DSJ_16565
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.663
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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