Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DSJ_16600Prohead protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)    
Predicted Functional Partners:
DSJ_16595
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.873
DSJ_16605
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.843
DSJ_16610
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.812
DSJ_16615
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.739
DSJ_16585
Head-tail adaptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.731
DSJ_16670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.725
DSJ_16580
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.678
DSJ_16575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.651
DSJ_16590
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.648
DSJ_16625
HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.645
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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