STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_17645DUF2778 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)    
Predicted Functional Partners:
DSJ_17640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.785
dcrB
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.774
DSJ_11755
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.620
DSJ_12635
Type VI secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.525
DSJ_15975
Formyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.518
DSJ_17650
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.516
DSJ_17655
Endolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.516
DSJ_17660
Phage holin, lambda family; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.516
DSJ_17635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.507
dacB
Serine-type D-Ala-D-Ala carboxypeptidase; Penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.499
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.