STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_17900DNA replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)    
Predicted Functional Partners:
DSJ_17895
Helicase DnaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.819
DSJ_17890
Nucleoside 2-deoxyribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.781
DSJ_16555
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.670
DSJ_10960
Phage N-6-adenine-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.602
DSJ_10835
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.
  
     0.542
DSJ_16675
Antirepressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.510
DSJ_12265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.500
DSJ_14180
Universal stress protein UspE; With UspC and UspD is involved in resistance to UV irradiation; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.487
DSJ_17880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.471
DSJ_17885
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.469
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.