STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_18455Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)    
Predicted Functional Partners:
DSJ_18465
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.934
DSJ_16595
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  
0.900
DSJ_18470
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.870
DSJ_18460
Prohead protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.863
DSJ_18485
HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.860
DSJ_18445
Malate permease; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.804
DSJ_16605
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.767
DSJ_16625
HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.758
DSJ_18475
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.741
DSJ_18450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.648
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.