Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
DSJ_18535DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)    
Predicted Functional Partners:
DSJ_18540
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.946
DSJ_18530
Antitermination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.775
DSJ_09965
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.773
DSJ_16540
Peptidase P60; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.580
DSJ_07345
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.560
DSJ_18545
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
DSJ_16535
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.540
DSJ_16545
Phage minor tail protein L; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
DSJ_18810
Death-on-curing family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.533
DSJ_17600
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.531
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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