Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DSJ_18540Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)    
Predicted Functional Partners:
DSJ_18535
DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.946
DSJ_18530
Antitermination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
DSJ_09970
DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.772
DSJ_09855
TetR family transcriptional regulator; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.
  
    0.601
DSJ_18810
Death-on-curing family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.579
DSJ_18545
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
DSJ_18515
Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.482
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.474
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.470
DSJ_10960
Phage N-6-adenine-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.460
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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