STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybaMDUF2496 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (51 aa)    
Predicted Functional Partners:
DSJ_19015
PriC; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.635
rsmF
16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.
  
   
 0.566
gsk
Catalyzes the formation of inosine/guanosine monophosphate from inosine or guanosine and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.539
DSJ_06565
Iron-hydroxamate transporter substrate-binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.530
DSJ_18395
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.501
dnaC
DNA replication protein DnaC; Acts to load the DnaB helicase onto the initiation site during DNA replication; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.478
ybfE
LexA regulated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.447
ybaN
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.416
DSJ_22405
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.408
ygdR
DUF903 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.404
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.