STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_19260Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (99 aa)    
Predicted Functional Partners:
DSJ_03360
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.734
DSJ_03735
Aldehyde oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.698
DSJ_06390
Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.695
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
     
 0.604
yeaE
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.600
tas
NADP(H)-dependent aldo-keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.526
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.526
ispA
(2E,6E)-farnesyl diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.
       0.517
dkgA
AraC family transcriptional regulator; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.495
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.