Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_20100Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (344 aa)    
Predicted Functional Partners:
DSJ_20105
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.965
DSJ_18905
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.864
DSJ_13750
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.850
DSJ_08725
Baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.758
DSJ_08720
Baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.751
DSJ_17520
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.748
DSJ_20095
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.743
DSJ_08735
Cro/Cl family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.742
DSJ_08780
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.727
DSJ_08755
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.717
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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