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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_20100Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (344 aa)    
Predicted Functional Partners:
DSJ_20105
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.964
DSJ_13750
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.844
DSJ_18905
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.806
DSJ_17520
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.779
DSJ_08725
Baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.762
DSJ_08720
Baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.759
DSJ_08745
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.759
DSJ_20095
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.747
DSJ_08755
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.745
DSJ_08735
Cro/Cl family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.742
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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