STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_20290Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)    
Predicted Functional Partners:
DSJ_20295
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.988
DSJ_20300
Protein CsuC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.963
DSJ_20310
Fimbrial assembly protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.799
DSJ_13695
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.729
DSJ_21450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.666
rcsF
Rcs stress response system protein RcsF; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.663
DSJ_21220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.575
DSJ_13625
SrfC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.562
DSJ_20285
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.560
DSJ_09315
Sensory transduction regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.552
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.