STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DSJ_20295Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)    
Predicted Functional Partners:
DSJ_20290
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.988
DSJ_20300
Protein CsuC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.964
DSJ_20310
Fimbrial assembly protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.824
DSJ_13695
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.687
rcsF
Rcs stress response system protein RcsF; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.633
DSJ_03560
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.561
DSJ_09315
Sensory transduction regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.548
DSJ_21550
YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.537
DSJ_16750
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.532
DSJ_09755
Competence protein TfoX; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.526
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.