Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DSJ_20375IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)    
Predicted Functional Partners:
DSJ_05895
Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.887
DSJ_20345
4-hydroxyphenylpyruvate dioxygenase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.663
DSJ_20370
3-oxoadipate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.660
DSJ_20365
4-carboxymuconolactone decarboxylase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.649
DSJ_20350
Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.631
metC
Cystathionine beta-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
ybgJ
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.434
ybgK
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.418
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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